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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CNTN6 ENSG00000134115

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Description

contactin 6 [Source:HGNC Symbol;Acc:2176]

Gene Synonyms

NB-3, NB3

Location

Chromosome 3: 1,134,260-1,445,901 forward strand.

GRCh37:CM000665.1

About this gene

This gene has 7 transcripts (splice variants), 123 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000446702.2	CNTN6-001	4513	1028aa	ENSP00000407822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2557	F5H752 Q9UQ52	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000350110.2	CNTN6-004	3814	1028aa	ENSP00000341882.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2557	F5H752 Q9UQ52	NM_014461.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000539053.1	CNTN6-201	3519	956aa	ENSP00000442791.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H752	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397479.2	CNTN6-002	3519	63aa	ENSP00000380616.2	Nonsense mediated decay		F8VWS7	-	-
ENST00000394261.2	CNTN6-003	1433	41aa	ENSP00000377804.2	Nonsense mediated decay		F8WDQ0	-	-
ENST00000413210.1	CNTN6-005	551	63aa	ENSP00000408460.1	Nonsense mediated decay		F8VWS7	-	-
ENST00000485257.1	CNTN6-006	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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