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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM47 ENSG00000132481

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Description

tripartite motif containing 47 [Source:HGNC Symbol;Acc:19020]

Gene Synonyms

GOA, RNF100

Location

Chromosome 17: 73,870,242-73,874,656 reverse strand.

GRCh37:CM000679.1

About this gene

This gene has 7 transcripts (splice variants), 166 orthologues and 80 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254816.2	TRIM47-001	2266	638aa	ENSP00000254816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32737	K7EJ63 Q96AD0 Q96LD4	NM_033452.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000587339.1	TRIM47-002	1907	400aa	ENSP00000465010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ63 Q96AD0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000586495.1	TRIM47-004	605	38aa	ENSP00000465038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585333.1	TRIM47-007	595	183aa	ENSP00000467645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000592942.1	TRIM47-006	793	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587774.1	TRIM47-003	720	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593089.1	TRIM47-005	392	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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