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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: RFX1 ENSG00000132005

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Description

regulatory factor X, 1 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9982]

Gene Synonyms

EF-C, EFC, RFX

Location

Chromosome 19: 14,072,350-14,117,851 reverse strand.

GRCh37:CM000681.1

About this gene

This gene has 7 transcripts (splice variants), 257 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254325.4	RFX1-001	4332	979aa	ENSP00000254325.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12301	P22670	NM_002918.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588885.1	RFX1-005	886	158aa	ENSP00000464960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586913.1	RFX1-006	440	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589239.1	RFX1-002	2122	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589760.1	RFX1-004	848	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589937.1	RFX1-003	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588520.1	RFX1-007	241	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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