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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NPAS1 ENSG00000130751

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Description

neuronal PAS domain protein 1 [Source:HGNC Symbol;Acc:7894]

Gene Synonyms

BHLHE11, MOP5, PASD5, bHLHe11

Location

Chromosome 19: 47,523,077-47,549,033 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 8 transcripts (splice variants), 183 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000602212.1	NPAS1-001	2117	590aa	ENSP00000469142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12694	Q99742	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000449844.2	NPAS1-003	2043	590aa	ENSP00000405290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12694	Q99742	NM_002517.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000602189.1	NPAS1-002	1643	415aa	ENSP00000472679.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2M8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439365.2	NPAS1-004	1341	234aa	ENSP00000398689.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DR69 M0R1R8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594670.1	NPAS1-006	763	214aa	ENSP00000472075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1R8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000594257.1	NPAS1-008	498	95aa	ENSP00000468871.1	Nonsense mediated decay		M0QX32	-	-
ENST00000600352.1	NPAS1-007	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601169.1	NPAS1-005	612	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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