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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SAFB2 ENSG00000130254

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Description

scaffold attachment factor B2 [Source:HGNC Symbol;Acc:21605]

Gene Synonyms

KIAA0138

Location

Chromosome 19: 5,587,010-5,624,057 reverse strand.

GRCh37:CM000681.1

About this gene

This gene has 11 transcripts (splice variants), 96 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252542.4	SAFB2-001	3371	953aa	ENSP00000252542.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32879	Q14151	NM_014649.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590262.1	SAFB2-004	564	124aa	ENSP00000468454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERX3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591120.1	SAFB2-002	1298	115aa	ENSP00000468505.1	Nonsense mediated decay		B4DKG3	-	-
ENST00000591123.1	SAFB2-005	836	87aa	ENSP00000467981.1	Nonsense mediated decay		K7EQU4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591310.1	SAFB2-006	722	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587802.1	SAFB2-010	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589925.1	SAFB2-008	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592599.1	SAFB2-003	2260	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590000.1	SAFB2-009	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591101.1	SAFB2-007	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585449.1	SAFB2-011	443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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