Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: RPAIN ENSG00000129197

.

Description

RPA interacting protein [Source:HGNC Symbol;Acc:28641]

Gene Synonyms

HRIP, MGC4189, RIP, hRIP

Location

Chromosome 17: 5,322,961-5,336,196 forward strand.

GRCh37:CM000679.1

About this gene

This gene has 17 transcripts (splice variants) and 188 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000405578.4	RPAIN-012	1083	231aa	ENSP00000385814.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54075	-	NM_001160243.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000381209.3	RPAIN-001	1535	219aa	ENSP00000370606.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32536	-	NM_001033002.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000381208.5	RPAIN-002	1394	172aa	ENSP00000370605.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54076	E9PDG9	NM_001160244.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000536255.2	RPAIN-003	1057	106aa	ENSP00000439939.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54079	Q86UA6	NM_001160246.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000327154.6	RPAIN-014	815	148aa	ENSP00000315069.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54077	-	NM_001160266.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000574003.1	RPAIN-017	561	106aa	ENSP00000467178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3Q7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000575112.1	RPAIN-011	3817	107aa	ENSP00000460354.1	Nonsense mediated decay		B3KTT3	-	-
ENST00000539417.2	RPAIN-005	1471	145aa	ENSP00000446453.2	Nonsense mediated decay		Q86UA6	-	-
ENST00000571558.1	RPAIN-006	1423	107aa	ENSP00000458699.1	Nonsense mediated decay		B3KTT3	-	-
ENST00000575599.1	RPAIN-007	1359	106aa	ENSP00000458218.1	Nonsense mediated decay		F5H3Q7	-	-
ENST00000573577.1	RPAIN-004	1282	107aa	ENSP00000460162.1	Nonsense mediated decay		B3KTT3	-	-
ENST00000573126.1	RPAIN-013	2728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571613.1	RPAIN-009	1688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571043.1	RPAIN-008	1547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570883.1	RPAIN-010	953	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575711.1	RPAIN-016	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572174.1	RPAIN-015	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.