Gene: SIX1 ENSG00000126778

Description

SIX homeobox 1 [Source:HGNC Symbol;Acc:10887]

Gene Synonyms

BOS3, DFNA23, TIP39

Location

GRCh37:CM000676.1

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues, 6 paralogues and is associated with 44 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000247182.6	SIX1-001	3996	284aa	ENSP00000247182.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9748	Q15475	NM_005982.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000554986.1	SIX1-005	512	111aa	ENSP00000452700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK85	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000555955.2	SIX1-004	2504	110aa	ENSP00000450952.3	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553535.1	SIX1-002	862	4aa	ENSP00000450739.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555627.1	SIX1-003	461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary