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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NCLN ENSG00000125912

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Description

nicalin [Source:HGNC Symbol;Acc:26923]

Gene Synonyms

NET59, NICALIN

Location

Chromosome 19: 3,185,561-3,209,573 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 8 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000246117.4	NCLN-001	4005	563aa	ENSP00000246117.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32869	B2RA56 K7EMW4 Q969V3	NM_020170.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000592737.1	NCLN-002	2735	282aa	ENSP00000466296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590671.1	NCLN-005	2070	489aa	ENSP00000466678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EMW4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588428.1	NCLN-006	1080	328aa	ENSP00000467011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592235.1	NCLN-008	380	72aa	ENSP00000466844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587740.1	NCLN-004	1210	350aa	ENSP00000466300.1	Nonsense mediated decay		Q969V3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586904.1	NCLN-007	836	110aa	ENSP00000467693.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591062.1	NCLN-009	460	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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