Description
hypoxia inducible factor 3, alpha subunit [Source:HGNC Symbol;Acc:15825]
Gene Synonyms
BHLHE17, HIF-3A, IPAS, MOP7, PASD7, bHLHe17
Location
Chromosome 19: 46,800,303-46,846,690 forward strand.
GRCh37:CM000681.1
About this gene
This gene has 21 transcripts (splice variants), 189 orthologues and 7 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000377670.4 | HIF3A-003 | 5852 | 669aa | ENSP00000366898.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12681 | E9PB04 O95262 Q9UPH7 Q9Y2N7 | NM_152795.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000339613.2 | HIF3A-201 | 5908 | 613aa | ENSP00000341877.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PB04 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000300862.3 | HIF3A-006 | 2551 | 667aa | ENSP00000300862.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12682 | E9PB04 Q9UPH7 Q9Y2N7 | NM_152794.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000244303.6 | HIF3A-007 | 2250 | 600aa | ENSP00000244303.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS42580 | Q9Y2N7 | NM_022462.4 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000600383.1 | HIF3A-023 | 2101 | 594aa | ENSP00000471560.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0R104 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000420102.2 | HIF3A-202 | 2101 | 612aa | ENSP00000407771.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H884 M0R104 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000472815.1 | HIF3A-004 | 1709 | 450aa | ENSP00000434653.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YDZ5 | NM_152796.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000533145.1 | HIF3A-012 | 573 | 148aa | ENSP00000435200.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PLC8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000528563.1 | HIF3A-018 | 1486 | 69aa | ENSP00000435532.1 | Nonsense mediated decay | E9PJR0 | - | - | |
| ENST00000600879.1 | HIF3A-024 | 576 | 69aa | ENSP00000469031.1 | Nonsense mediated decay | E9PJR0 | - | - | |
| ENST00000533789.1 | HIF3A-010 | 562 | 81aa | ENSP00000432809.1 | Nonsense mediated decay | E9PNQ7 | - | - | |
| ENST00000531043.1 | HIF3A-016 | 544 | 93aa | ENSP00000434700.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000526506.1 | HIF3A-014 | 539 | 69aa | ENSP00000432613.1 | Nonsense mediated decay | E9PJR0 | - | - | |
| ENST00000525854.1 | HIF3A-013 | 767 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000244302.4 | HIF3A-001 | 2101 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000291300.4 | HIF3A-009 | 2101 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000475432.2 | HIF3A-002 | 2004 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000529542.1 | HIF3A-017 | 1031 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000529205.1 | HIF3A-015 | 549 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000524533.1 | HIF3A-011 | 507 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000600236.1 | HIF3A-008 | 313 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
