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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: COL10A1 ENSG00000123500

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Description

collagen, type X, alpha 1 [Source:HGNC Symbol;Acc:2185]

Location

Chromosome 6: 116,440,086-116,479,910 reverse strand.

GRCh37:CM000668.1

About this gene

This gene has 4 transcripts (splice variants), 219 orthologues, 23 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327673.4	COL10A1-001	3498	680aa	ENSP00000327368.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5105	Q03692 Q5QPC7 Q5QPC8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000243222.4	COL10A1-201	3289	680aa	ENSP00000243222.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5105	Q03692 Q5QPC7 Q5QPC8	NM_000493.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000452729.1	COL10A1-003	732	216aa	ENSP00000411285.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QPC7 Q5QPC8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418500.1	COL10A1-002	303	51aa	ENSP00000392712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QPC8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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