Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Source:HGNC Symbol;Acc:17821]
Gene Synonyms
BAT1, BAT1L, DDX39, DDX39A, DDXL, URH49
Location
Chromosome 19: 14,519,631-14,530,192 reverse strand.
GRCh37:CM000681.1
About this gene
This gene has 21 transcripts (splice variants), 285 orthologues and 38 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000242776.4 | DDX39A-001 | 1471 | 427aa | ENSP00000242776.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12308 | K7EIL8 K7EL56 K7EN69 K7ENP6 O00148 | NM_005804.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000589675.1 | DDX39A-012 | 829 | 255aa | ENSP00000467911.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EQN7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000454233.2 | DDX39A-201 | 804 | 267aa | ENSP00000392929.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1Q2N1 K7EIL8 K7EL56 K7EN69 K7ENP6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000592632.1 | DDX39A-013 | 586 | 176aa | ENSP00000466754.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EL56 K7EN25 K7ENP6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000586993.1 | DDX39A-010 | 585 | 125aa | ENSP00000464801.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EIL8 K7EL56 K7ENP6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000590315.1 | DDX39A-015 | 566 | 189aa | ENSP00000467411.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000590239.1 | DDX39A-007 | 565 | 130aa | ENSP00000466810.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EIL8 K7EL56 K7EN69 K7ENP6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000590696.1 | DDX39A-009 | 563 | 92aa | ENSP00000467040.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ENP6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000591275.1 | DDX39A-008 | 484 | 108aa | ENSP00000465926.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EL56 K7ENP6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000588692.1 | DDX39A-004 | 1478 | 267aa | ENSP00000467862.1 | Nonsense mediated decay | B1Q2N1 K7EIL8 K7EL56 K7EN69 K7ENP6 | - | - | |
| ENST00000324340.9 | DDX39A-020 | 1355 | 322aa | ENSP00000322749.8 | Nonsense mediated decay | K7EIL8 K7EL56 K7EN69 K7ENP6 O00148 | - | - | |
| ENST00000592927.1 | DDX39A-018 | 823 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000593008.1 | DDX39A-011 | 538 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000589318.1 | DDX39A-003 | 1903 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000587730.1 | DDX39A-005 | 1813 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000588542.1 | DDX39A-017 | 1297 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000586558.1 | DDX39A-002 | 1127 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000592391.1 | DDX39A-019 | 1080 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000590260.1 | DDX39A-006 | 988 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000593026.1 | DDX39A-014 | 657 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000590556.1 | DDX39A-016 | 575 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
