Gene: DDX39A ENSG00000123136

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Source:HGNC Symbol;Acc:17821]

Gene Synonyms

BAT1, BAT1L, DDX39, DDX39A, DDXL, URH49

Location

Chromosome 19: 14,519,631-14,530,192 reverse strand.

GRCh37:CM000681.1

About this gene

This gene has 21 transcripts (splice variants), 285 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000242776.4	DDX39A-001	1471	427aa	ENSP00000242776.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12308	K7EIL8 K7EL56 K7EN69 K7ENP6 O00148	NM_005804.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000589675.1	DDX39A-012	829	255aa	ENSP00000467911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQN7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000454233.2	DDX39A-201	804	267aa	ENSP00000392929.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1Q2N1 K7EIL8 K7EL56 K7EN69 K7ENP6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000592632.1	DDX39A-013	586	176aa	ENSP00000466754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL56 K7EN25 K7ENP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586993.1	DDX39A-010	585	125aa	ENSP00000464801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIL8 K7EL56 K7ENP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590315.1	DDX39A-015	566	189aa	ENSP00000467411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000590239.1	DDX39A-007	565	130aa	ENSP00000466810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIL8 K7EL56 K7EN69 K7ENP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590696.1	DDX39A-009	563	92aa	ENSP00000467040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591275.1	DDX39A-008	484	108aa	ENSP00000465926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL56 K7ENP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588692.1	DDX39A-004	1478	267aa	ENSP00000467862.1	Nonsense mediated decay		B1Q2N1 K7EIL8 K7EL56 K7EN69 K7ENP6	-	-
ENST00000324340.9	DDX39A-020	1355	322aa	ENSP00000322749.8	Nonsense mediated decay		K7EIL8 K7EL56 K7EN69 K7ENP6 O00148	-	-
ENST00000592927.1	DDX39A-018	823	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593008.1	DDX39A-011	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589318.1	DDX39A-003	1903	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587730.1	DDX39A-005	1813	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588542.1	DDX39A-017	1297	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586558.1	DDX39A-002	1127	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592391.1	DDX39A-019	1080	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590260.1	DDX39A-006	988	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593026.1	DDX39A-014	657	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590556.1	DDX39A-016	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: DDX39A ENSG00000123136

Summary