Description
SRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:20495]
Gene Synonyms
C14orf156, DC50, PD04872
Location
Chromosome 14: 78,174,414-78,227,447 forward strand.
GRCh37:CM000676.1
About this gene
This gene has 11 transcripts (splice variants), 178 orthologues and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000557342.1 | SLIRP-001 | 408 | 109aa | ENSP00000450909.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9866 | Q9GZT3 | NM_031210.5 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000557623.1 | SLIRP-003 | 865 | 98aa | ENSP00000452057.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V4X6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000556831.1 | SLIRP-006 | 729 | 96aa | ENSP00000450770.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000557431.1 | SLIRP-004 | 725 | 124aa | ENSP00000450849.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2S9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000556375.1 | SLIRP-008 | 408 | 72aa | ENSP00000452162.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YJU7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000238688.5 | SLIRP-002 | 394 | 107aa | ENSP00000238688.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58331 | Q9GZT3 | NM_001267863.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000553981.1 | SLIRP-010 | 285 | 56aa | ENSP00000450587.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YJ07 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000556310.1 | SLIRP-009 | 626 | 76aa | ENSP00000452329.1 | Nonsense mediated decay | H0YJW7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000555890.1 | SLIRP-005 | 471 | 40aa | ENSP00000451606.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000556956.1 | SLIRP-011 | 450 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000554074.1 | SLIRP-007 | 445 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
