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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HAVCR1 ENSG00000113249

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Description

hepatitis A virus cellular receptor 1 [Source:HGNC Symbol;Acc:17866]

Gene Synonyms

HAVCR, HAVCR-1, KIM-1, KIM1, TIM, TIM-1, TIM1, TIMD-1, TIMD1

Location

Chromosome 5: 156,456,424-156,486,130 reverse strand.

GRCh37:CM000667.1

About this gene

This gene has 7 transcripts (splice variants), 159 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339252.3	HAVCR1-003	1845	364aa	ENSP00000344844.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43392	E5RIF6 Q96D42	NM_012206.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000425854.1	HAVCR1-201	1807	401aa	ENSP00000403333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIF6 E9PFX0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000522693.1	HAVCR1-002	1713	401aa	ENSP00000428524.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIF6 E9PFX0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544197.1	HAVCR1-202	1493	364aa	ENSP00000440258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43392	E5RIF6 Q96D42	NM_001099414.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000523175.1	HAVCR1-001	1449	364aa	ENSP00000427898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43392	E5RIF6 Q96D42	NM_001173393.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000518745.1	HAVCR1-004	774	223aa	ENSP00000428422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIF6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517644.1	HAVCR1-005	402	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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