Human (GRCh37.p13)
Description

protein tyrosine phosphatase, non-receptor type 6 [Source:HGNC Symbol;Acc:9658]

Gene Synonyms

HCP, HCPH, HPTP1C, PTP-1C, PTP1C, SH-PTP1, SHP-1, SHP-1L, SHP1

Location

Chromosome 12: 7,055,631-7,070,479 forward strand.

GRCh37:CM000674.1

View alleles of this gene on alternative sequences

About this gene

This gene has 24 transcripts (splice variants), 1 gene allele, 13 paralogues and is associated with 48 phenotypes.

Show/hide columns (1 hidden)
  • Transcript ID
  • Name
  • bp
  • Protein
  • Translation ID
  • Biotype
  • CCDS
  • UniProt Match
  • RefSeq
  • Flags
Transcript IDNamebpProteinBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000456013.1PTPN6-2022389624aa
 
Protein coding
CCDS44821F5H0N8 P29350 NM_080549.3Ensembl CanonicalGENCODE Basic
ENST00000318974.9PTPN6-0082245595aa
 
Protein coding
CCDS44820F5H0N8 P29350 NM_002831.5GENCODE Basic
ENST00000399448.1PTPN6-0012159597aa
 
Protein coding
CCDS41744P29350 Q53XS4 NM_080548.4GENCODE Basic
ENST00000447931.2PTPN6-2011971556aa
 
Protein coding
P29350 -GENCODE Basic
ENST00000543115.1PTPN6-018650130aa
 
Protein coding
F5H5H9 -CDS 3' incomplete
ENST00000541698.1PTPN6-023592150aa
 
Protein coding
F5H1Z8 -CDS 3' incomplete
ENST00000538715.1PTPN6-014579165aa
 
Protein coding
F5H0N8 -CDS 3' incomplete
ENST00000542462.1PTPN6-021570144aa
 
Protein coding
F5GY79 -CDS 3' incomplete
ENST00000545153.1PTPN6-01295972aa
 
Nonsense mediated decay
U3KQS1 --
ENST00000542848.1PTPN6-01965658aa
 
Nonsense mediated decay
F5H4Z1 --
ENST00000536013.1PTPN6-01360256aa
 
Nonsense mediated decay
F5H1V7 --
ENST00000535462.1PTPN6-01654360aa
 
Nonsense mediated decay
F5GXD4 --
ENST00000539029.1PTPN6-004705No protein
 
Processed transcript
---
ENST00000537533.1PTPN6-005673No protein
 
Processed transcript
---
ENST00000542277.1PTPN6-007664No protein
 
Processed transcript
---
ENST00000540740.1PTPN6-011592No protein
 
Processed transcript
---
ENST00000543120.1PTPN6-010564No protein
 
Processed transcript
---
ENST00000534900.1PTPN6-025538No protein
 
Processed transcript
---
ENST00000416215.2PTPN6-0032412No protein
 
Retained intron
---
ENST00000543744.1PTPN6-0022043No protein
 
Retained intron
---
ENST00000539365.1PTPN6-022907No protein
 
Retained intron
---
ENST00000542761.1PTPN6-006795No protein
 
Retained intron
---
ENST00000538318.1PTPN6-024759No protein
 
Retained intron
---
ENST00000536521.1PTPN6-015513No protein
 
Retained intron
---
Name

PTPN6 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P29350

CCDS

This gene is a member of the Human CCDS set: CCDS41744.1, CCDS44820.1, CCDS44821.1

Ensembl version

ENSG00000111679.12

Other assemblies

This gene maps to 6,946,468-6,961,316 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:
OTTHUMG00000168518 (version 2)

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