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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC38A1 ENSG00000111371

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Description

solute carrier family 38, member 1 [Source:HGNC Symbol;Acc:13447]

Gene Synonyms

ATA1, NAT2, SAT1, SNAT1

Location

Chromosome 12: 46,576,846-46,663,800 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 10 transcripts (splice variants), 161 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398637.5	SLC38A1-002	8066	487aa	ENSP00000381634.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41774	F8VX12 Q8NCD8 Q9H2H9	NM_030674.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439706.1	SLC38A1-003	3436	487aa	ENSP00000398142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41774	F8VX12 Q8NCD8 Q9H2H9	NM_001278387.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000549049.1	SLC38A1-005	3196	487aa	ENSP00000449607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41774	F8VX12 Q8NCD8 Q9H2H9	NM_001278388.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552197.1	SLC38A1-001	2599	503aa	ENSP00000449756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61106	F8VX04 F8VX12	NM_001278390.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000546893.1	SLC38A1-006	2332	487aa	ENSP00000447853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41774	F8VX12 Q8NCD8 Q9H2H9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000550173.1	SLC38A1-009	891	78aa	ENSP00000449744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VX12	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549633.1	SLC38A1-004	1076	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551506.1	SLC38A1-011	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546519.1	SLC38A1-008	309	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548979.1	SLC38A1-010	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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