Description
lymphotoxin beta receptor (TNFR superfamily, member 3) [Source:HGNC Symbol;Acc:6718]
Gene Synonyms
CD18, D12S370, LT-BETA-R, TNF-R-III, TNFCR, TNFR-RP, TNFR2-RP, TNFR3, TNFRSF3
Location
Chromosome 12: 6,484,211-6,500,733 forward strand.
GRCh37:CM000674.1
About this gene
This gene has 15 transcripts (splice variants), 534 orthologues and 21 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000228918.4 | LTBR-001 | 2260 | 435aa | ENSP00000228918.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8544 | B3KTD9 P36941 Q75UT6 | NM_002342.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000539925.1 | LTBR-003 | 1665 | 416aa | ENSP00000440875.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS59233 | B3KTD9 P36941 | NM_001270987.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000541102.1 | LTBR-010 | 1084 | 292aa | ENSP00000438605.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H2E7 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000536876.1 | LTBR-014 | 842 | 217aa | ENSP00000437647.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H6F8 Q75UT6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000543190.1 | LTBR-012 | 785 | 74aa | ENSP00000438955.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H1S5 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000544454.1 | LTBR-006 | 632 | 148aa | ENSP00000437954.1 | Nonsense mediated decay | F5H627 | - | - | |
| ENST00000546296.1 | LTBR-004 | 783 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000541005.1 | LTBR-008 | 583 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000542830.1 | LTBR-005 | 539 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000543542.1 | LTBR-007 | 367 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000441074.2 | LTBR-009 | 2323 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000444814.2 | LTBR-002 | 1553 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000535739.1 | LTBR-013 | 928 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000440421.2 | LTBR-011 | 729 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000545445.1 | LTBR-015 | 379 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
