Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PRDM4 ENSG00000110851

.

Description

PR domain containing 4 [Source:HGNC Symbol;Acc:9348]

Gene Synonyms

PFM1

Location

Chromosome 12: 108,126,643-108,155,049 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 6 transcripts (splice variants), 215 orthologues and 51 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000228437.5	PRDM4-001	4210	801aa	ENSP00000228437.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9115	F8VRG2 Q9UKN5	NM_012406.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000550659.1	PRDM4-005	837	279aa	ENSP00000449295.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YIF6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000547188.1	PRDM4-004	640	75aa	ENSP00000448684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRG2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550376.1	PRDM4-002	2591	316aa	ENSP00000446803.1	Nonsense mediated decay		F8VRG2 F8VZQ2	-	-
ENST00000547268.1	PRDM4-003	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549416.1	PRDM4-006	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.