Gene: PRPF40B ENSG00000110844

Description

PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:25031]

Gene Synonyms

HYPC

Location

Chromosome 12: 49,962,001-50,038,449 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 16 transcripts (splice variants), 117 orthologues, 1 paralogue and is associated with 53 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000548825.2	PRPF40B-019	3307	892aa	ENSP00000448073.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31796	F8VU11	NM_001031698.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000261897.1	PRPF40B-002	3602	858aa	ENSP00000261897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NWY9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000380281.1	PRPF40B-001	3154	871aa	ENSP00000369634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NWY9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000551063.1	PRPF40B-003	531	6aa	ENSP00000449569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549547.1	PRPF40B-016	697	137aa	ENSP00000449485.1	Nonsense mediated decay		H0YII7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000508736.1	PRPF40B-008	1861	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552301.1	PRPF40B-005	912	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547764.1	PRPF40B-004	803	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527253.2	PRPF40B-007	742	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548436.1	PRPF40B-009	2059	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551111.1	PRPF40B-011	1061	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551269.1	PRPF40B-017	923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546626.1	PRPF40B-014	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551418.1	PRPF40B-010	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551320.1	PRPF40B-013	455	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548399.1	PRPF40B-012	455	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: PRPF40B ENSG00000110844

Summary