Description
SRY (sex determining region Y)-box 6 [Source:HGNC Symbol;Acc:16421]
Gene Synonyms
HSSOX6, SOXD
Location
Chromosome 11: 15,987,995-16,761,138 reverse strand.
GRCh37:CM000673.1
About this gene
This gene has 18 transcripts (splice variants), 273 orthologues, 20 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000396356.3 | SOX6-202 | 8865 | 808aa | ENSP00000379644.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7821 | E9PN02 E9PQ67 E9PQL4 P35712 | NM_033326.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000352083.6 | SOX6-201 | 8925 | 828aa | ENSP00000339876.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PN02 E9PQ67 E9PQL4 P35712 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000316399.6 | SOX6-001 | 8808 | 808aa | ENSP00000324948.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7821 | E9PN02 E9PQ67 E9PQL4 P35712 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000528252.1 | SOX6-002 | 2707 | 801aa | ENSP00000432134.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53604 | E9PN02 E9PQ67 E9PQL4 P35712 | NM_001145811.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000527619.1 | SOX6-003 | 2699 | 804aa | ENSP00000434455.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53605 | E9PN02 E9PQ67 E9PQL4 P35712 | NM_017508.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000528429.1 | SOX6-012 | 2656 | 828aa | ENSP00000433233.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PN02 E9PQ67 E9PQL4 P35712 | NM_001145819.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000533411.1 | SOX6-009 | 586 | 159aa | ENSP00000436170.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PN02 E9PQ67 E9PQL4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000529469.1 | SOX6-008 | 549 | 79aa | ENSP00000432596.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PQ67 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000526673.1 | SOX6-010 | 534 | 139aa | ENSP00000434892.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PN02 E9PQ67 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000530378.1 | SOX6-011 | 1818 | 159aa | ENSP00000432577.1 | Nonsense mediated decay | E9PN02 E9PQ67 E9PQ78 | - | - | |
| ENST00000533658.1 | SOX6-006 | 1198 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000524520.1 | SOX6-015 | 709 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000525835.1 | SOX6-017 | 660 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000527840.1 | SOX6-007 | 574 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000525259.1 | SOX6-016 | 574 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000524650.1 | SOX6-013 | 534 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000531297.1 | SOX6-014 | 429 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000533870.1 | SOX6-005 | 7224 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
