Description
membrane-spanning 4-domains, subfamily A, member 6A [Source:HGNC Symbol;Acc:13375]
Gene Synonyms
4SPAN3, 4SPAN3.2, CD20L3, MS4A6, MST090, MSTP090
Location
Chromosome 11: 59,939,081-59,952,139 reverse strand.
GRCh37:CM000673.1
About this gene
This gene has 22 transcripts (splice variants), 361 orthologues and 16 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000412309.2 | MS4A6A-006 | 1284 | 253aa | ENSP00000403212.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58134 | E9PL03 E9PMN8 E9PNG6 F8W9K1 | NM_022349.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000528851.1 | MS4A6A-002 | 1806 | 225aa | ENSP00000431901.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44615 | E9PNG6 Q9H2W1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000426738.2 | MS4A6A-202 | 1536 | 180aa | ENSP00000392770.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7EMT7 E9PNG6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000323961.3 | MS4A6A-201 | 1535 | 248aa | ENSP00000315878.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7981 | E9PNG6 Q9H2W1 | NM_152851.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000530839.1 | MS4A6A-001 | 1383 | 248aa | ENSP00000436979.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7981 | E9PNG6 Q9H2W1 | NM_152852.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000529054.1 | MS4A6A-004 | 1160 | 276aa | ENSP00000435844.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PL03 E9PMN8 E9PNG6 E9PSA9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000532169.1 | MS4A6A-005 | 1136 | 141aa | ENSP00000431266.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PNG6 Q9H2W1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000420732.2 | MS4A6A-003 | 863 | 178aa | ENSP00000392921.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44616 | E9PNG6 Q9H2W1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000533023.1 | MS4A6A-014 | 780 | 114aa | ENSP00000436172.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PNG6 G5EA21 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000533409.1 | MS4A6A-009 | 682 | 23aa | ENSP00000437152.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PNG6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000533989.1 | MS4A6A-018 | 586 | 113aa | ENSP00000436133.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000534596.1 | MS4A6A-013 | 577 | 101aa | ENSP00000433436.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PL03 E9PMN8 E9PNG6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000531531.1 | MS4A6A-016 | 567 | 77aa | ENSP00000433012.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PMN8 E9PNG6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000527254.1 | MS4A6A-020 | 790 | 120aa | ENSP00000435630.1 | Nonsense mediated decay | E9PJ78 E9PNG6 | - | - | |
| ENST00000529906.1 | MS4A6A-015 | 589 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000528925.1 | MS4A6A-008 | 509 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000526677.1 | MS4A6A-007 | 2416 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000531914.1 | MS4A6A-019 | 640 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000533660.1 | MS4A6A-011 | 571 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525549.1 | MS4A6A-012 | 552 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000526697.1 | MS4A6A-010 | 549 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000530179.1 | MS4A6A-017 | 548 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
