Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: RAPGEFL1 ENSG00000108352

.

Description

Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:HGNC Symbol;Acc:17428]

Gene Synonyms

Link-GEFII

Location

Chromosome 17: 38,333,263-38,351,908 forward strand.

GRCh37:CM000679.1

About this gene

This gene has 12 transcripts (splice variants), 194 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000436615.3	RAPGEFL1-201	3727	456aa	ENSP00000408322.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11363	F5GXC6 F5GY17 F5GYJ3 Q9UHV5	NM_016339.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000264644.6	RAPGEFL1-007	3429	456aa	ENSP00000264644.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11363	F5GXC6 F5GY17 F5GYJ3 Q9UHV5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544503.1	RAPGEFL1-004	2079	505aa	ENSP00000438631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXC6 F5GY17 F5GYJ3 F5H2D5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000456989.2	RAPGEFL1-005	1582	511aa	ENSP00000394530.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXC6 F5GY17 F5GYJ3 Q9UHV5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000538981.1	RAPGEFL1-008	779	101aa	ENSP00000441059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXC6 F5GY17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543876.1	RAPGEFL1-011	560	149aa	ENSP00000440226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXC6 F5GY17 F5GYJ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538884.1	RAPGEFL1-006	540	20aa	ENSP00000440006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541245.1	RAPGEFL1-012	382	62aa	ENSP00000444646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY17 F5H582	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540388.1	RAPGEFL1-001	1743	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545893.1	RAPGEFL1-010	1527	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469209.1	RAPGEFL1-003	662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496032.1	RAPGEFL1-002	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.