Description
ring finger protein 40, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:16867]
Gene Synonyms
BRE1B, KIAA0661, RBP95, STARING
Location
Chromosome 16: 30,773,066-30,787,628 forward strand.
GRCh37:CM000678.1
About this gene
This gene has 13 transcripts (splice variants), 198 orthologues and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000324685.6 | RNF40-001 | 5634 | 1001aa | ENSP00000325677.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10691 | B4E313 H3BQ99 H3BS50 H3BUL6 I3L332 O75150 | NM_014771.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000563683.1 | RNF40-011 | 4063 | 961aa | ENSP00000455180.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4E313 H3BP71 H3BQ99 H3BUL6 I3L332 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000357890.5 | RNF40-009 | 3917 | 901aa | ENSP00000350563.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55994 | B4E313 H3BQ99 H3BUL6 I3L332 O75150 | NM_001207034.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000402121.3 | RNF40-201 | 2634 | 693aa | ENSP00000384942.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4E313 F8W8Z4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000563909.1 | RNF40-012 | 711 | 111aa | ENSP00000455678.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BQ99 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000565995.1 | RNF40-010 | 586 | 174aa | ENSP00000456538.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BS50 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000566811.1 | RNF40-013 | 569 | 129aa | ENSP00000457697.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BQ99 H3BUL6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000565931.1 | RNF40-015 | 481 | 144aa | ENSP00000460142.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BQ99 H3BUL6 I3L332 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000602784.1 | RNF40-020 | 991 | 14aa | ENSP00000473507.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000567365.1 | RNF40-019 | 597 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493683.1 | RNF40-002 | 5371 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000566703.1 | RNF40-017 | 808 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000564260.1 | RNF40-018 | 768 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
