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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TMC5 ENSG00000103534

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Description

transmembrane channel-like 5 [Source:HGNC Symbol;Acc:22999]

Gene Synonyms

FLJ13593

Location

Chromosome 16: 19,421,818-19,510,435 forward strand.

GRCh37:CM000678.1

About this gene

This gene has 11 transcripts (splice variants), 213 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396229.2	TMC5-201	4917	1006aa	ENSP00000379531.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45431	Q6UXY8	NM_001105248.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542583.2	TMC5-006	4872	1006aa	ENSP00000446274.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45431	Q6UXY8	NM_001261841.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000381414.4	TMC5-001	4755	948aa	ENSP00000370822.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42126	Q6UXY8	NM_001105249.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000219821.5	TMC5-002	3687	760aa	ENSP00000219821.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10577	Q6UXY8	NM_024780.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000541464.1	TMC5-007	3581	954aa	ENSP00000441227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYU8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000561503.1	TMC5-004	2487	647aa	ENSP00000456148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6UXY8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000564959.1	TMC5-005	2434	689aa	ENSP00000454710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BN68	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000574033.1	TMC5-012	839	32aa	ENSP00000458240.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572147.1	TMC5-011	463	42aa	ENSP00000461008.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563675.1	TMC5-009	273	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567478.1	TMC5-008	2397	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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