Description
syntaxin 4 [Source:HGNC Symbol;Acc:11439]
Gene Synonyms
STX4A, p35-2
Location
Chromosome 16: 31,044,210-31,054,296 forward strand.
GRCh37:CM000678.1
About this gene
This gene has 16 transcripts (splice variants), 191 orthologues and 12 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000313843.3 | STX4-001 | 1481 | 297aa | ENSP00000317714.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10700 | B7Z425 Q12846 | NM_004604.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000394998.1 | STX4-003 | 1498 | 295aa | ENSP00000378447.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61916 | A8MXY0 B7Z425 | NM_001272096.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000457779.2 | STX4-005 | 571 | 175aa | ENSP00000390788.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JFM5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000496977.1 | STX4-006 | 983 | 64aa | ENSP00000454841.1 | Nonsense mediated decay | H3BMK2 | - | - | |
| ENST00000460668.1 | STX4-009 | 842 | 64aa | ENSP00000454419.1 | Nonsense mediated decay | H3BMK2 | - | - | |
| ENST00000493902.1 | STX4-002 | 1588 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000503629.2 | STX4-016 | 1377 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000564368.1 | STX4-017 | 561 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000487411.1 | STX4-004 | 1290 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461455.1 | STX4-007 | 1002 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000565483.1 | STX4-014 | 846 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000566353.1 | STX4-013 | 696 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486660.1 | STX4-010 | 610 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000475862.1 | STX4-011 | 604 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468583.1 | STX4-012 | 564 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000478150.1 | STX4-008 | 545 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
