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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TSNAXIP1 ENSG00000102904

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Description

translin-associated factor X interacting protein 1 [Source:HGNC Symbol;Acc:18586]

Gene Synonyms

TXI1

Location

Chromosome 16: 67,840,668-67,866,051 forward strand.

GRCh37:CM000678.1

About this gene

This gene has 16 transcripts (splice variants) and 106 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000388833.3	TSNAXIP1-001	2429	658aa	ENSP00000373485.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10846	J3QQL6 J3QSH8 Q2TAA8	NM_018430.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415766.3	TSNAXIP1-004	2338	643aa	ENSP00000411472.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ENJ7 J3QQL6 J3QSH8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000561639.1	TSNAXIP1-006	2258	712aa	ENSP00000457241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DXD0 J3QQL6 J3QSH8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431934.2	TSNAXIP1-008	1284	428aa	ENSP00000397147.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQF4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567852.1	TSNAXIP1-014	834	79aa	ENSP00000463792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQL6 J3QSH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565148.1	TSNAXIP1-011	555	171aa	ENSP00000454989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNS9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000561654.1	TSNAXIP1-013	547	33aa	ENSP00000464694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QSH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568990.1	TSNAXIP1-009	2517	141aa	ENSP00000455640.1	Nonsense mediated decay		H3BQ72	-	-
ENST00000466164.1	TSNAXIP1-003	2228	61aa	ENSP00000458938.1	Nonsense mediated decay		I3L1M2	-	-
ENST00000565558.1	TSNAXIP1-015	816	123aa	ENSP00000464527.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563363.1	TSNAXIP1-012	619	97aa	ENSP00000455011.1	Nonsense mediated decay		H3BNU6	-	-
ENST00000562321.1	TSNAXIP1-016	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487120.1	TSNAXIP1-002	2159	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569504.1	TSNAXIP1-007	2009	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565339.1	TSNAXIP1-005	1818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562633.1	TSNAXIP1-010	474	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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