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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TSC22D1 ENSG00000102804

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Description

TSC22 domain family, member 1 [Source:HGNC Symbol;Acc:16826]

Gene Synonyms

KIAA1994, MGC17597, Ptg-2, TGFB1I4, TSC22

Location

Chromosome 13: 45,007,655-45,151,283 reverse strand.

GRCh37:CM000675.1

About this gene

This gene has 11 transcripts (splice variants), 191 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000458659.2	TSC22D1-001	4820	1073aa	ENSP00000397435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31966	C9IZ15 Q15714	NM_183422.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000501704.2	TSC22D1-201	2335	570aa	ENSP00000437414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58291	C9IZ15 Q15714	NM_001243799.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000261489.2	TSC22D1-002	1749	144aa	ENSP00000261489.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9392	C9JYW3 Q15714	NM_006022.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000493016.1	TSC22D1-008	690	142aa	ENSP00000418739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZ15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000472477.1	TSC22D1-009	349	41aa	ENSP00000419864.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486464.1	TSC22D1-005	1093	149aa	ENSP00000417476.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460842.1	TSC22D1-006	903	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496314.1	TSC22D1-004	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487881.2	TSC22D1-003	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000437455.2	TSC22D1-007	434	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496838.1	TSC22D1-010	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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