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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CDK5RAP1 ENSG00000101391

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Description

CDK5 regulatory subunit associated protein 1 [Source:HGNC Symbol;Acc:15880]

Gene Synonyms

C20orf34, C42, CGI-05, HSPC167

Location

Chromosome 20: 31,946,645-31,989,367 reverse strand.

GRCh37:CM000682.1

About this gene

This gene has 17 transcripts (splice variants), 144 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000346416.2	CDK5RAP1-010	2122	587aa	ENSP00000217372.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13219	Q53H36 Q96SZ6	NM_016408.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000357886.4	CDK5RAP1-011	2164	601aa	ENSP00000350558.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96SZ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000473997.1	CDK5RAP1-013	1930	497aa	ENSP00000476857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_016082.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000339269.5	CDK5RAP1-012	1891	510aa	ENSP00000341840.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63255	Q96SZ6	NM_001278168.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544843.1	CDK5RAP1-201	1791	426aa	ENSP00000439034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96SZ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427097.1	CDK5RAP1-007	974	256aa	ENSP00000409474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477105.1	CDK5RAP1-016	979	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481964.1	CDK5RAP1-001	945	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496381.1	CDK5RAP1-002	858	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482967.1	CDK5RAP1-005	840	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498525.1	CDK5RAP1-009	777	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471264.1	CDK5RAP1-006	763	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461356.1	CDK5RAP1-015	758	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488723.1	CDK5RAP1-004	708	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460043.1	CDK5RAP1-003	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461710.1	CDK5RAP1-014	2650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473791.1	CDK5RAP1-008	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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