Description
sec1 family domain containing 1 [Source:HGNC Symbol;Acc:20726]
Gene Synonyms
C14orf163, KIAA0917, RA410, SLY1, SLY1P, STXBP1L2
Location
Chromosome 14: 31,091,318-31,205,018 forward strand.
GRCh37:CM000676.1
About this gene
This gene has 26 transcripts (splice variants), 212 orthologues and 7 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000458591.2 | SCFD1-006 | 2359 | 642aa | ENSP00000390783.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9639 | B7Z5N7 G3V2M8 G3V5E2 Q8WVM8 | NM_016106.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000544052.2 | SCFD1-004 | 2058 | 575aa | ENSP00000443010.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45092 | B7Z5N7 G3V5E2 Q8WVM8 | NM_182835.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000396629.2 | SCFD1-010 | 2021 | 550aa | ENSP00000379870.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58308 | B7Z5N7 G3V5E2 Q8WVM8 | NM_001257376.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000541123.1 | SCFD1-202 | 2016 | 457aa | ENSP00000443537.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z5N7 | NM_001283031.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000421551.3 | SCFD1-201 | 1943 | 583aa | ENSP00000388078.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z5N7 B7Z738 G3V5E2 | NM_001283032.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000557076.1 | SCFD1-014 | 743 | 198aa | ENSP00000450755.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2M8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000469043.1 | SCFD1-001 | 696 | 144aa | ENSP00000452448.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V5E2 H0YJY1 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000553693.1 | SCFD1-015 | 490 | 84aa | ENSP00000452308.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V5E2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000484733.2 | SCFD1-002 | 2308 | 55aa | ENSP00000452178.1 | Nonsense mediated decay | G3V551 | - | - | |
| ENST00000311943.7 | SCFD1-009 | 2016 | 163aa | ENSP00000309417.7 | Nonsense mediated decay | J3KNG4 | - | - | |
| ENST00000463622.2 | SCFD1-008 | 1943 | 48aa | ENSP00000451298.1 | Nonsense mediated decay | G3V3K9 | - | - | |
| ENST00000556768.1 | SCFD1-007 | 1829 | 75aa | ENSP00000451811.1 | Nonsense mediated decay | G3V4I1 | - | - | |
| ENST00000555259.1 | SCFD1-005 | 1553 | 121aa | ENSP00000452323.1 | Nonsense mediated decay | G3V5F3 | - | - | |
| ENST00000554437.1 | SCFD1-022 | 688 | 35aa | ENSP00000450546.1 | Nonsense mediated decay | H0YIZ7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000554776.1 | SCFD1-026 | 583 | 102aa | ENSP00000452046.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000557713.1 | SCFD1-013 | 556 | 92aa | ENSP00000451064.1 | Nonsense mediated decay | G3V363 | - | - | |
| ENST00000554486.1 | SCFD1-019 | 819 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000554819.1 | SCFD1-017 | 608 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000556486.1 | SCFD1-012 | 974 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000556534.1 | SCFD1-020 | 864 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000553278.1 | SCFD1-018 | 795 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000553280.1 | SCFD1-025 | 574 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000555550.1 | SCFD1-023 | 541 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000556413.1 | SCFD1-016 | 512 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000555953.1 | SCFD1-021 | 497 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000556256.1 | SCFD1-024 | 428 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
