Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]
Gene Synonyms
APP-1, APP1, PABP4, iPABP
Location
Chromosome 1: 40,026,488-40,042,462 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 25 transcripts (splice variants), 241 orthologues and 24 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000372858.3 | PABPC4-002 | 2753 | 660aa | ENSP00000361949.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44115 | B1ANR1 Q13310 | NM_001135653.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000372857.3 | PABPC4-001 | 3048 | 644aa | ENSP00000361948.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS438 | B1ANR1 Q13310 | NM_003819.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000372856.3 | PABPC4-004 | 3016 | 631aa | ENSP00000361947.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44114 | B1ANR1 Q13310 | NM_001135654.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000372862.3 | PABPC4-003 | 2470 | 615aa | ENSP00000361953.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1ANR0 B1ANR1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000421687.2 | PABPC4-017 | 1663 | 550aa | ENSP00000398267.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000451091.2 | PABPC4-011 | 898 | 129aa | ENSP00000406675.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1ANR1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000437136.1 | PABPC4-013 | 876 | 195aa | ENSP00000408559.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000527718.1 | PABPC4-021 | 746 | 249aa | ENSP00000436566.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000474378.1 | PABPC4-008 | 591 | 197aa | ENSP00000431383.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000531243.2 | PABPC4-018 | 532 | 4aa | ENSP00000436698.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000530186.1 | PABPC4-024 | 352 | 68aa | ENSP00000436407.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000470443.1 | PABPC4-007 | 1212 | 112aa | ENSP00000436391.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000529216.1 | PABPC4-025 | 317 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000468476.1 | PABPC4-006 | 3592 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000492468.1 | PABPC4-005 | 2257 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525045.1 | PABPC4-023 | 765 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000513632.2 | PABPC4-020 | 738 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482028.1 | PABPC4-012 | 633 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525669.1 | PABPC4-022 | 582 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525751.1 | PABPC4-019 | 556 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000483770.1 | PABPC4-016 | 476 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000484555.1 | PABPC4-015 | 450 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000477556.1 | PABPC4-009 | 413 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000492519.1 | PABPC4-010 | 323 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461578.1 | PABPC4-014 | 193 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
