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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TMEM40 ENSG00000088726

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Description

transmembrane protein 40 [Source:HGNC Symbol;Acc:25620]

Gene Synonyms

FLJ11036

Location

Chromosome 3: 12,775,024-12,810,956 reverse strand.

GRCh37:CM000665.1

About this gene

This gene has 9 transcripts (splice variants) and 105 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000314124.7	TMEM40-001	2308	233aa	ENSP00000322837.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2613	Q8WWA1	NM_018306.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000435575.1	TMEM40-002	1785	157aa	ENSP00000396895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68347	C9JID5	NM_001284408.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000435218.2	TMEM40-003	1547	203aa	ENSP00000405740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68348	Q8WWA1	NM_001284407.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000264728.8	TMEM40-004	984	233aa	ENSP00000264728.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2613	Q8WWA1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431022.2	TMEM40-201	979	249aa	ENSP00000407396.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DXI0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000428020.1	TMEM40-006	431	97aa	ENSP00000392140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZY7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476331.1	TMEM40-007	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485124.1	TMEM40-008	927	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480698.1	TMEM40-005	507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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