Description
LIM and senescent cell antigen-like domains 2 [Source:HGNC Symbol;Acc:16084]
Gene Synonyms
PINCH-2, PINCH2
Location
Chromosome 2: 128,395,956-128,439,360 reverse strand.
GRCh37:CM000664.1
About this gene
This gene has 18 transcripts (splice variants), 129 orthologues, 3 paralogues and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000324938.5 | LIMS2-005 | 2111 | 365aa | ENSP00000326888.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2147 | A0PJ44 Q7Z4I5 Q7Z4I7 Q9BV95 Q9H058 | NM_017980.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000409455.1 | LIMS2-004 | 2500 | 336aa | ENSP00000386383.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54394 | A0PJ44 Q7Z4I5 Q7Z4I7 Q9BV95 Q9H058 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000410011.1 | LIMS2-003 | 2335 | 336aa | ENSP00000387002.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54394 | A0PJ44 Q7Z4I5 Q7Z4I7 Q9BV95 Q9H058 | NM_001161404.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000409808.2 | LIMS2-002 | 2315 | 336aa | ENSP00000386637.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54394 | A0PJ44 Q7Z4I5 Q7Z4I7 Q9BV95 Q9H058 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000355119.4 | LIMS2-001 | 2045 | 341aa | ENSP00000347240.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54395 | A0PJ44 Q53RZ1 Q7Z4I5 Q7Z4I7 Q9BV95 Q9H058 | NM_001161403.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000545738.2 | LIMS2-018 | 1730 | 363aa | ENSP00000443794.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54396 | A0PJ44 Q7Z4I5 Q7Z4I7 Q9BV95 Q9H058 | NM_001136037.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000410038.1 | LIMS2-006 | 1695 | 189aa | ENSP00000386570.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58725 | A0PJ44 Q7Z4I7 Q9BV95 Q9H058 | NM_001256542.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000409286.1 | LIMS2-009 | 1678 | 189aa | ENSP00000386252.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58725 | A0PJ44 Q7Z4I7 Q9BV95 Q9H058 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000409754.1 | LIMS2-008 | 1620 | 189aa | ENSP00000386345.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58725 | A0PJ44 Q7Z4I7 Q9BV95 Q9H058 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000426981.1 | LIMS2-007 | 1409 | 169aa | ENSP00000397253.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0PJ44 Q9BV95 Q9H058 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000409254.1 | LIMS2-012 | 867 | 189aa | ENSP00000386907.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58725 | A0PJ44 Q7Z4I7 Q9BV95 Q9H058 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000413578.1 | LIMS2-013 | 930 | 60aa | ENSP00000388611.1 | Nonsense mediated decay | F8WEF3 | - | - | |
| ENST00000494613.1 | LIMS2-016 | 1137 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000582671.1 | LIMS2-020 | 531 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000469300.2 | LIMS2-014 | 4807 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000466410.1 | LIMS2-011 | 2592 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000476932.1 | LIMS2-017 | 2269 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000484252.1 | LIMS2-015 | 2099 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
