Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: LMCD1 ENSG00000071282

.

Description

LIM and cysteine-rich domains 1 [Source:HGNC Symbol;Acc:6633]

Location

Chromosome 3: 8,543,393-8,609,805 forward strand.

GRCh37:CM000665.1

About this gene

This gene has 8 transcripts (splice variants), 202 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000157600.3	LMCD1-001	1851	365aa	ENSP00000157600.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33688	B4DG80 Q9NZU5	NM_014583.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000426878.1	LMCD1-006	1170	204aa	ENSP00000411222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3D2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000454244.1	LMCD1-002	1113	292aa	ENSP00000396515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63534	B4DG80	NM_001278233.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397386.3	LMCD1-201	1061	253aa	ENSP00000380542.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63533	B4DEY6	NM_001278234.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415597.1	LMCD1-004	870	233aa	ENSP00000400555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYS1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535732.1	LMCD1-202	858	247aa	ENSP00000441100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63532	F5GX84 H7C3D2	NM_001278235.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000456506.1	LMCD1-003	1059	58aa	ENSP00000405049.1	Nonsense mediated decay		F8WB09	-	-
ENST00000470776.1	LMCD1-005	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.