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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ST6GALNAC1 ENSG00000070526

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Description

ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 [Source:HGNC Symbol;Acc:23614]

Gene Synonyms

HSY11339, SIAT7A, ST6GalNAcI, STYI

Location

Chromosome 17: 74,620,843-74,639,920 reverse strand.

GRCh37:CM000679.1

About this gene

This gene has 11 transcripts (splice variants), 245 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000156626.7	ST6GALNAC1-001	2570	600aa	ENSP00000156626.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11748	Q9NSC7	NM_018414.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590784.1	ST6GALNAC1-010	458	152aa	ENSP00000466436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EMB6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589992.1	ST6GALNAC1-006	419	63aa	ENSP00000468784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJA8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000592042.1	ST6GALNAC1-004	2657	63aa	ENSP00000465092.1	Nonsense mediated decay		K7EJA8	-	-
ENST00000359088.5	ST6GALNAC1-002	2321	471aa	ENSP00000351991.4	Nonsense mediated decay		G3XAD9	-	-
ENST00000585633.1	ST6GALNAC1-008	667	59aa	ENSP00000466230.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589813.1	ST6GALNAC1-005	567	47aa	ENSP00000465116.1	Nonsense mediated decay		K7EJC9	-	-
ENST00000590878.1	ST6GALNAC1-003	1311	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589004.1	ST6GALNAC1-011	758	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590915.1	ST6GALNAC1-007	471	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588375.1	ST6GALNAC1-009	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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