Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Gene Synonyms
CO11A1, COLL6, STL2
Location
Chromosome 1: 103,342,023-103,574,052 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 10 transcripts (splice variants), 219 orthologues, 37 paralogues and is associated with 14 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000370096.3 | COL11A1-001 | 7286 | 1806aa | ENSP00000359114.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS778 | B4DQZ0 P12107 Q4FAC4 | NM_001854.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000358392.2 | COL11A1-202 | 7327 | 1818aa | ENSP00000351163.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DQZ0 C9JMN2 P12107 | NM_080629.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000353414.4 | COL11A1-201 | 7174 | 1767aa | ENSP00000302551.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53348 | B4DQZ0 P12107 | NM_001190709.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000512756.1 | COL11A1-008 | 5442 | 1690aa | ENSP00000426533.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS780 | B4DQZ0 P12107 Q4FAC4 | NM_080630.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000427239.1 | COL11A1-002 | 1709 | 569aa | ENSP00000408640.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JMN2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000447608.1 | COL11A1-003 | 776 | 200aa | ENSP00000410177.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C381 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000461720.1 | COL11A1-004 | 678 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475980.1 | COL11A1-005 | 377 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000470170.1 | COL11A1-007 | 785 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000465209.1 | COL11A1-006 | 297 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
