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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LIMA1 ENSG00000050405

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Description

LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:24636]

Gene Synonyms

EPLIN, SREBP3

Location

Chromosome 12: 50,569,571-50,677,329 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 16 transcripts (splice variants) and 247 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394943.3	LIMA1-001	3669	760aa	ENSP00000378400.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44877	F8VTU2 F8VVQ7 Q59FE8 Q9UHB6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000547825.1	LIMA1-007	3920	457aa	ENSP00000448706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58230	Q9UHB6	NM_001243775.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000341247.4	LIMA1-003	3706	759aa	ENSP00000340184.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8802	F8VTU2 F8VVQ7 Q9UHB6	NM_016357.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552783.1	LIMA1-002	3612	600aa	ENSP00000448779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55826	Q9UHB6	NM_001113547.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552823.1	LIMA1-006	3254	599aa	ENSP00000450266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UHB6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552491.1	LIMA1-017	2652	456aa	ENSP00000448463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VS07	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552909.1	LIMA1-004	2162	598aa	ENSP00000450087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQE1 F8VS07	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000551691.1	LIMA1-009	583	130aa	ENSP00000447975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VTU2 F8VVQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550592.1	LIMA1-008	567	111aa	ENSP00000449890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552720.1	LIMA1-005	2457	388aa	ENSP00000448411.1	Nonsense mediated decay		F8VRN8 F8VTU2 F8VVQ7	-	-
ENST00000552008.1	LIMA1-011	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552338.1	LIMA1-015	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550611.1	LIMA1-010	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549064.1	LIMA1-014	648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551486.1	LIMA1-012	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552045.1	LIMA1-016	386	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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