Description
calcium binding and coiled-coil domain 1 [Source:HGNC Symbol;Acc:29306]
Gene Synonyms
Cocoa, KIAA1536, calphoglin
Location
Chromosome 12: 54,104,903-54,121,529 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 22 transcripts (splice variants), 252 orthologues and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000550804.1 | CALCOCO1-001 | 2291 | 691aa | ENSP00000449960.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8864 | F8VPN1 F8VQE3 F8VRQ9 F8VUB3 F8VWP8 F8VZI3 F8W0X2 Q9P1Z2 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000548263.1 | CALCOCO1-003 | 3888 | 633aa | ENSP00000447647.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VQE3 F8VRQ9 F8VUB3 F8VWP8 F8VZI3 F8W0X2 Q9P1Z2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000262059.4 | CALCOCO1-004 | 3264 | 690aa | ENSP00000262059.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VQE3 F8VRQ9 F8VUB3 F8VWP8 F8VZI3 F8W0X2 Q9P1Z2 | NM_020898.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000430117.2 | CALCOCO1-006 | 2706 | 606aa | ENSP00000397189.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44908 | Q9P1Z2 | NM_001143682.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000546443.1 | CALCOCO1-011 | 1523 | 232aa | ENSP00000456437.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000549784.1 | CALCOCO1-017 | 746 | 149aa | ENSP00000447117.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VUB3 F8VWP8 F8VZI3 F8W0X2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000549349.1 | CALCOCO1-015 | 586 | 115aa | ENSP00000450012.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VWP8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000548177.1 | CALCOCO1-016 | 567 | 134aa | ENSP00000446820.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VUB3 F8VWP8 F8VZI3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000551900.1 | CALCOCO1-028 | 559 | 164aa | ENSP00000450083.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VQE3 F8VRQ9 F8VUB3 F8VWP8 F8VZI3 F8W0X2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000549173.1 | CALCOCO1-030 | 554 | 160aa | ENSP00000449058.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VXS2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000552623.1 | CALCOCO1-025 | 551 | 120aa | ENSP00000448026.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VUB3 F8VWP8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000546619.1 | CALCOCO1-027 | 549 | 159aa | ENSP00000448621.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VPN1 F8VRQ9 F8VUB3 F8VWP8 F8VZI3 F8W0X2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000549688.1 | CALCOCO1-024 | 549 | 104aa | ENSP00000449796.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VWP8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000547885.1 | CALCOCO1-019 | 555 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000547949.2 | CALCOCO1-021 | 532 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000549935.2 | CALCOCO1-007 | 2112 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000547988.1 | CALCOCO1-005 | 1277 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000549613.1 | CALCOCO1-013 | 884 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000546774.1 | CALCOCO1-018 | 733 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000548431.1 | CALCOCO1-020 | 612 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000552282.1 | CALCOCO1-022 | 569 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000553154.1 | CALCOCO1-026 | 566 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
