Description
aggrecan [Source:HGNC Symbol;Acc:319]
Gene Synonyms
AGC1, AGCAN, CSPG1, CSPGCP, MSK16, SEDK
Location
Chromosome 15: 89,346,674-89,418,585 forward strand.
GRCh37:CM000677.1
About this gene
This gene has 8 transcripts (splice variants), 8 paralogues and is associated with 6 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ACAN-201 | ENST00000439576.2 | 8840 | 2530aa | ENSP00000387356.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53970 | E7EX88 Q6LE94 | NM_013227 NP_037359 | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| ACAN-006 | ENST00000561243.1 | 7593 | 2530aa | ENSP00000453342.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53970 | E7EX88 Q6LE94 | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| ACAN-004 | ENST00000352105.7 | 7526 | 2431aa | ENSP00000341615.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53971 | E7ENV9 | NM_001135 NP_001126 | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| ACAN-008 | ENST00000559004.1 | 7628 | 2492aa | ENSP00000453499.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | H0YM81 | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| ACAN-001 | ENST00000558207.1 | 4159 | 721aa | ENSP00000453003.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q6PID9 | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| ACAN-003 | ENST00000558704.1 | 712 | 156aa | ENSP00000452682.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| ACAN-005 | ENST00000560601.1 | 679 | 226aa | ENSP00000453581.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q6LE94 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, |
| ACAN-002 | ENST00000558604.1 | 749 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | - |
