Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: FAM49A ENSG00000197872

.

Description

family with sequence similarity 49, member A [Source:HGNC Symbol;Acc:25373]

Gene Synonyms

DKFZP566A1524, FAM49A, FLJ11080

Location

Chromosome 2: 16,730,727-16,847,599 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 6 transcripts (splice variants), 211 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381323.3	FAM49A-001	4670	323aa	ENSP00000370724.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1688	B3KRB1 C9IYV6 C9JPE5 Q53QW2 Q9H0Q0	NM_030797.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000406434.1	FAM49A-002	1386	323aa	ENSP00000384771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1688	B3KRB1 C9IYV6 C9JPE5 Q53QW2 Q9H0Q0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000355549.2	FAM49A-201	1120	323aa	ENSP00000347744.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1688	B3KRB1 C9IYV6 C9JPE5 Q53QW2 Q9H0Q0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000451689.1	FAM49A-004	579	87aa	ENSP00000388979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445605.1	FAM49A-003	544	94aa	ENSP00000392154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYV6 C9JPE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000469507.1	FAM49A-005	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.