Gene: NFIA ENSG00000162599

Description

nuclear factor I/A [Source:HGNC Symbol;Acc:7784]

Gene Synonyms

CTF, KIAA1439, NF-I/A, NF1-A, NFI-A, NFI-L

Location

Chromosome 1: 61,330,931-61,928,465 forward strand.

GRCh37:CM000663.1

About this gene

This gene has 14 transcripts (splice variants), 3 paralogues and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371189.4	NFIA-015	1989	554aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53322	Q12857 S4R3K4	NM_001145512.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000403491.3	NFIA-001	9487	509aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44156	Q12857 S4R3K4	NM_005595.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000357977.5	NFIA-008	3200	157aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3K5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371187.3	NFIA-003	2683	498aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS615	Q12857 S4R3K4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000407417.3	NFIA-014	2123	501aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53321	Q12857 S4R3K4	NM_001145511.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371191.1	NFIA-002	1916	532aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKN8 S4R3K4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371185.2	NFIA-005	1714	487aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKN5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000485903.2	NFIA-007	1674	466aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKN7 S4R3K4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371184.2	NFIA-006	1348	380aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKN6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000476646.1	NFIA-013	730	186aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3K4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493627.1	NFIA-011	696	47aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q659D5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496712.1	NFIA-012	603	95aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482020.1	NFIA-010	552	184aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000479364.1	NFIA-009	1010	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Name

NFIA (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q12857

CCDS

This gene is a member of the Human CCDS set: CCDS44156.1, CCDS53321.1, CCDS53322.1, CCDS615.1

Ensembl version

ENSG00000162599.11

Other assemblies

This gene maps to 60,865,259-61,462,793 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000008618 (version 7)

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Gene: NFIA ENSG00000162599

Summary