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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: C9orf116 ENSG00000160345

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Description

chromosome 9 open reading frame 116 [Source:HGNC Symbol;Acc:28435]

Gene Synonyms

MGC29761, PIERCE1, RbEST47

Location

Chromosome 9: 138,387,027-138,393,580 reverse strand.

GRCh37:CM000671.1

About this gene

This gene has 5 transcripts (splice variants), 158 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000429260.2	C9orf116-004	678	136aa	ENSP00000395281.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43899	Q5BN46	NM_144654.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371789.3	C9orf116-002	1278	92aa	ENSP00000360854.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6989	Q5BN46	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371791.1	C9orf116-001	781	92aa	ENSP00000360856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6989	Q5BN46	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000419770.1	C9orf116-003	273	70aa	ENSP00000396392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000371786.3	C9orf116-005	612	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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