Human (GRCh37.p13)
Description

HNF1 homeobox A [Source:HGNC Symbol;Acc:11621]

Gene Synonyms

HNF-1A, HNF1, IDDM20, LFB1, MODY3, TCF-1, TCF1

Location

Chromosome 12: 121,416,346-121,440,315 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 14 transcripts (splice variants), 1 paralogue and is associated with 76 phenotypes.

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  • Transcript ID
  • Name
  • bp
  • Protein
  • Translation ID
  • Biotype
  • CCDS
  • UniProt Match
  • RefSeq
  • Flags
Transcript IDNamebpProteinBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000257555.6HNF1A-0013442631aa
 
Protein coding
CCDS9209B8YNU9 B8YNW1 E0YMJ1
E0YMJ2
-Ensembl CanonicalGENCODE Basic
ENST00000541395.1HNF1A-0233332662aa
 
Protein coding
B8YNU9 B8YNW1 F5H5U3
NM_000545.5GENCODE Basic
ENST00000402929.1HNF1A-0033002520aa
 
Protein coding
B8YNU9 B8YNW1 U3KPW5
-GENCODE Basic
ENST00000400024.2HNF1A-0022337542aa
 
Protein coding
B8YNU9 B8YNW1 E0YMK2
U3KQS6
-GENCODE Basic
ENST00000544413.1HNF1A-0252014638aa
 
Protein coding
B8YNU9 B8YNW1 F5H0K0
-GENCODE Basic
ENST00000543427.1HNF1A-2011493403aa
 
Protein coding
B8YNW1 P20823 -GENCODE Basic
ENST00000538626.1HNF1A-017582124aa
 
Protein coding
E0YMK3 -GENCODE Basic
ENST00000535955.1HNF1A-020434114aa
 
Protein coding
U3KQ02 -CDS 5' incomplete
ENST00000540108.1HNF1A-0243039119aa
 
Nonsense mediated decay
B8YNU9 E2I9R5 --
ENST00000560968.1HNF1A-0273030356aa
 
Nonsense mediated decay
B8YNU9 E0YMI8 -CDS 5' incomplete
ENST00000538646.1HNF1A-0151649278aa
 
Nonsense mediated decay
B8YNU9 P20823 --
ENST00000541924.1HNF1A-0141594247aa
 
Nonsense mediated decay
B8YNU9 P20823 --
ENST00000544574.1HNF1A-01672541aa
 
Nonsense mediated decay
F5H3Z5 --
ENST00000543255.1HNF1A-026762No protein
 
Retained intron
---
Name

HNF1A (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P20823

CCDS

This gene is a member of the Human CCDS set: CCDS9209.1

LRG

LRG_522 provides a stable genomic reference framework for describing sequence variants for this gene

Ensembl version

ENSG00000135100.13

Other assemblies

This gene maps to 120,978,543-121,002,512 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:
OTTHUMG00000151015 (version 6)

Basic Gene Annotations from GENCODE 19

The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

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Basic Gene Annotations from GENCODE 19

The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

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Contigs

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