Description
cleavage and polyadenylation specific factor 3-like [Source:HGNC Symbol;Acc:26052]
Gene Synonyms
CPSF73L, FLJ20542, INT11, INTS11, RC-68, RC68, hsa-mir-6727
Location
Chromosome 1: 1,246,965-1,260,071 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 48 transcripts (splice variants), 202 orthologues and 3 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000540437.1 | CPSF3L-201 | 2530 | 606aa | ENSP00000445001.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS57960 | E9PI75 E9PNH9 J3QRY6 Q5TA45 | NM_001256456.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000435064.1 | CPSF3L-001 | 2148 | 600aa | ENSP00000413493.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS21 | E9PNH9 J3QRY6 Q5TA45 | NM_017871.5 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000545578.1 | CPSF3L-202 | 1975 | 571aa | ENSP00000444672.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS57959 | E9PNH9 J3QRY6 Q5TA45 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000421495.2 | CPSF3L-007 | 1868 | 342aa | ENSP00000464436.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QRY6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000450926.2 | CPSF3L-023 | 1839 | 578aa | ENSP00000392848.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QRY6 Q5TA45 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000411962.1 | CPSF3L-011 | 1832 | 502aa | ENSP00000400548.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYS7 J3QRY6 | NM_001256462.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000419704.1 | CPSF3L-009 | 1798 | 499aa | ENSP00000404886.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS57961 | J3QRY6 Q5TA45 | NM_001256463.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000434694.2 | CPSF3L-017 | 1056 | 344aa | ENSP00000411233.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J979 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000530031.1 | CPSF3L-034 | 800 | 249aa | ENSP00000432009.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PIG1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000527719.1 | CPSF3L-030 | 750 | 209aa | ENSP00000436743.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PI75 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000526332.1 | CPSF3L-038 | 579 | 109aa | ENSP00000434790.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PNH9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000498476.2 | CPSF3L-031 | 554 | 167aa | ENSP00000436824.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PQF0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000534345.1 | CPSF3L-032 | 485 | 140aa | ENSP00000435772.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PIL7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000458452.3 | CPSF3L-012 | 2571 | 62aa | ENSP00000433930.1 | Nonsense mediated decay | E9PIS0 | - | - | |
| ENST00000527098.1 | CPSF3L-024 | 2004 | 92aa | ENSP00000431952.1 | Nonsense mediated decay | E9PIX9 | - | - | |
| ENST00000532772.1 | CPSF3L-029 | 1618 | 46aa | ENSP00000431214.1 | Nonsense mediated decay | E9PMA2 | - | - | |
| ENST00000528879.1 | CPSF3L-046 | 1524 | 278aa | ENSP00000432777.1 | Nonsense mediated decay | E9PNH9 E9PNS4 | - | - | |
| ENST00000430786.1 | CPSF3L-013 | 849 | 101aa | ENSP00000404012.1 | Nonsense mediated decay | H7C247 | - | - | |
| ENST00000531377.1 | CPSF3L-042 | 816 | 54aa | ENSP00000433264.1 | Nonsense mediated decay | H0YDB1 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000527383.1 | CPSF3L-043 | 668 | 34aa | ENSP00000431425.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000526797.1 | CPSF3L-037 | 659 | 81aa | ENSP00000435418.1 | Nonsense mediated decay | E9PKA4 | - | - | |
| ENST00000470679.1 | CPSF3L-025 | 584 | 55aa | ENSP00000434782.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000525285.1 | CPSF3L-036 | 579 | 64aa | ENSP00000436396.1 | Nonsense mediated decay | E9PIS0 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000531019.1 | CPSF3L-033 | 549 | 56aa | ENSP00000433733.1 | Nonsense mediated decay | E9PJG0 | - | - | |
| ENST00000462432.1 | CPSF3L-005 | 2863 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493534.2 | CPSF3L-015 | 896 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000532952.1 | CPSF3L-027 | 773 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000490853.1 | CPSF3L-014 | 704 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000478641.1 | CPSF3L-006 | 3079 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000323275.6 | CPSF3L-004 | 2450 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496353.1 | CPSF3L-003 | 2428 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000470030.2 | CPSF3L-008 | 2369 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000498173.2 | CPSF3L-002 | 1589 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000488042.2 | CPSF3L-018 | 1134 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000429572.1 | CPSF3L-016 | 1104 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000497304.2 | CPSF3L-021 | 932 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461514.2 | CPSF3L-020 | 913 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000485710.1 | CPSF3L-022 | 883 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525164.1 | CPSF3L-048 | 816 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525603.1 | CPSF3L-026 | 738 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000531292.1 | CPSF3L-044 | 704 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525769.1 | CPSF3L-047 | 695 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000467408.2 | CPSF3L-019 | 639 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000530233.1 | CPSF3L-035 | 595 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000526113.1 | CPSF3L-040 | 591 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000526904.1 | CPSF3L-039 | 551 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000531020.1 | CPSF3L-045 | 548 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000533916.1 | CPSF3L-041 | 405 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
