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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC47 ENSG00000108588

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Description

coiled-coil domain containing 47 [Source:HGNC Symbol;Acc:24856]

Gene Synonyms

GK001, MSTP041

Location

Chromosome 17: 61,822,610-61,853,711 reverse strand.

GRCh37:CM000679.1

About this gene

This gene has 6 transcripts (splice variants), 1 paralogue and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225726.5	CCDC47-001	3466	483aa	ENSP00000225726.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11643	Q96A33	NM_020198.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403162.3	CCDC47-002	2195	483aa	ENSP00000384888.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11643	Q96A33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582252.1	CCDC47-003	1719	480aa	ENSP00000463577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96A33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580986.1	CCDC47-005	552	19aa	ENSP00000462202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582331.2	CCDC47-006	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584112.1	CCDC47-007	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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