Description
CCCTC-binding factor (zinc finger protein)-like [Source:HGNC Symbol;Acc:16234]
Gene Synonyms
BORIS, CT27, CTCF-T, HMGB1L1, dJ579F20.2
Location
Chromosome 20: 56,071,035-56,100,708 reverse strand.
GRCh37:CM000682.1
About this gene
This gene has 22 transcripts (splice variants), 396 orthologues and 36 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000423479.3 | CTCFL-020 | 2465 | 700aa | ENSP00000415579.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58780 | Q8NI51 | NM_001269043.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000608263.1 | CTCFL-019 | 4040 | 663aa | ENSP00000476783.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13459 | - | NM_001269041.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000429804.3 | CTCFL-005 | 3864 | 613aa | ENSP00000415329.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58779 | Q8NI51 | NM_001269046.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000609232.1 | CTCFL-004 | 3668 | 663aa | ENSP00000476398.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13459 | - | NM_080618.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000243914.3 | CTCFL-001 | 3567 | 663aa | ENSP00000243914.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13459 | Q8NI51 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000371196.2 | CTCFL-003 | 3491 | 663aa | ENSP00000360239.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13459 | Q8NI51 | NM_001269042.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000422869.2 | CTCFL-016 | 2966 | 573aa | ENSP00000399061.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58782 | Q8NI51 | NM_001269047.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000432255.2 | CTCFL-006 | 2955 | 483aa | ENSP00000409344.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58778 | Q8NI51 | NM_001269048.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000608425.1 | CTCFL-014 | 2915 | 627aa | ENSP00000476458.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS68164 | - | NM_001269045.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000608440.1 | CTCFL-023 | 2749 | 665aa | ENSP00000477488.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58781 | A6XGN2 | NM_001269044.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000539382.1 | CTCFL-013 | 2262 | 422aa | ENSP00000439998.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58777 | Q8NI51 | NM_001269050.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000433949.3 | CTCFL-021 | 2234 | 460aa | ENSP00000392034.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS68162 | A6XGN2 Q8NI51 | NM_001269049.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000608903.1 | CTCFL-015 | 2135 | 299aa | ENSP00000476718.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS68161 | A6XGN4 | NM_001269055.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000502686.2 | CTCFL-022 | 2023 | 403aa | ENSP00000437999.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58776 | Q8NI51 | NM_001269054.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000608158.1 | CTCFL-011 | 1984 | 404aa | ENSP00000477165.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS68163 | - | NM_001269052.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000481655.2 | CTCFL-012 | 1512 | 404aa | ENSP00000476577.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS68163 | - | NM_001269051.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000426658.2 | CTCFL-017 | 3996 | 451aa | ENSP00000403369.2 | Nonsense mediated decay | F5H2V8 | - | - | |
| ENST00000422109.2 | CTCFL-018 | 2964 | 427aa | ENSP00000413713.2 | Nonsense mediated decay | Q8NI51 | - | - | |
| ENST00000608720.1 | CTCFL-007 | 2241 | 426aa | ENSP00000477412.1 | Nonsense mediated decay | A6XGN5 | - | - | |
| ENST00000608858.1 | CTCFL-008 | 905 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000607923.1 | CTCFL-010 | 2964 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000608108.1 | CTCFL-009 | 1628 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
