Human (GRCh37.p13)
Description

C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:31966]

Gene Synonyms

UNQ5782

Location

Chromosome 12: 10,163,226-10,171,218 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 5 transcripts (splice variants) and 6 paralogues.

Show/hide columns (1 hidden)
  • Transcript ID
  • Name
  • bp
  • Protein
  • Translation ID
  • Biotype
  • CCDS
  • UniProt Match
  • RefSeq
  • Flags
Transcript IDNamebpProteinBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000338896.5CLEC12B-0011097276aa
 
Protein coding
CCDS44830Q2HXU8 NM_001129998.1Ensembl CanonicalGENCODE Basic
ENST00000396502.1CLEC12B-0033029232aa
 
Protein coding
CCDS8610Q2HXU8 NM_205852.2GENCODE Basic
ENST00000539155.1CLEC12B-004289865aa
 
Nonsense mediated decay
F5H4H7 --
ENST00000544853.1CLEC12B-0021193232aa
 
Nonsense mediated decay
CCDS8610Q2HXU8 --
ENST00000535903.1CLEC12B-005531No protein
 
Retained intron
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Structural variants

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  • Name
  • Chr:bp
  • Genomic size (bp)
  • Class
  • Source Study
  • Study description
NameChr:bpGenomic size (bp)ClassSource StudyStudy description
nsv390424212:1-133851895133,851,895CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv390648412:89061-3417879934,089,739CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv390672312:148034-3417879934,030,766CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277172212:148375-3786447737,716,103CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv391442712:148375-3786447737,716,103CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv42957812:150442-11474657-CNVDGVa:nstd11Database of Genomic Variants Archive: Walter 2009 "Acquired copy number alterations in adult acute myeloid leukemia genomes." PMID:19651600
nsv42963012:150442-30580981-CNVDGVa:nstd11Database of Genomic Variants Archive: Walter 2009 "Acquired copy number alterations in adult acute myeloid leukemia genomes." PMID:19651600
nsv98479212:163819-133778796133,614,978CNVDGVa:nstd92Database of Genomic Variants Archive: Forsberg 2014 "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer." PMID:24777449
nsv98474312:163819-133778796133,614,978CNVDGVa:nstd92Database of Genomic Variants Archive: Forsberg 2014 "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer." PMID:24777449
nsv276982212:173786-1167745611,503,671CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv389247812:173786-1167745611,503,671CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277139112:173786-2002608019,852,295CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv277189712:173786-2528686525,113,080CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390561312:173786-2528686525,113,080CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv390448812:173786-2821922928,045,444CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv445545812:173786-3449662834,322,843CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv99595612:173786-3483583734,662,052CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390171412:173786-3483583734,662,052CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv392426212:173786-3483583734,662,052CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv389715112:173786-3786910737,695,322CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277133612:173786-3786930137,695,516CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390563312:173786-3786930137,695,516CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277060912:173787-133777902133,604,116CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390544712:173787-133777902133,604,116CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv709881312:176047-3417985234,003,806CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
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Copy number variant probes

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  • Name
  • Chr:bp
  • Genomic size (bp)
  • Class
  • Source Study
  • Study description
NameChr:bpGenomic size (bp)ClassSource StudyStudy description
CN_59283012:10163515-10163539-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59283812:10164830-10164854-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59285112:10169725-10169749-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59285312:10169928-10169952-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0