Gene: OLR1 (ENSG00000173391) - Structural variants - Homo_sapiens

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309539.3	OLR1-001	2460	273aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8618	F5H001 F5H0N6 F5H3G7 F5H7N8 J3QTI8 P78380	NM_002543.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545927.1	OLR1-008	1008	189aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53746	F5H001 F5H0N6 P78380	NM_001172633.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000432556.2	OLR1-002	950	181aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53745	B7ZAN8 P78380	NM_001172632.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544577.1	OLR1-003	924	165aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZH1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000543993.1	OLR1-005	822	77aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZAN8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000539518.1	OLR1-007	732	214aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H001 F5H0N6 F5H3G7 F5H7N8 J3QTI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000339968.6	OLR1-010	591	104aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0N6 J3QTI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538745.1	OLR1-009	583	123aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0N6 F5H3G7 J3QTI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538873.1	OLR1-013	516	57aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0N6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543414.1	OLR1-006	466	104aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H001	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536989.1	OLR1-014	569	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Structural variants

Name	Chr:bp	Genomic size (bp)	Class	Source Study	Study description
nsv3904242	12:1-133851895	133851895133,851,895	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv3906484	12:89061-34178799	3408973934,089,739	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv3906723	12:148034-34178799	3403076634,030,766	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv2771722	12:148375-37864477	3771610337,716,103	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv3914427	12:148375-37864477	3771610337,716,103	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv429578	12:150442-11474657	0-	CNV	DGVa:nstd11	Database of Genomic Variants Archive: Walter 2009 "Acquired copy number alterations in adult acute myeloid leukemia genomes." PMID:19651600
nsv429630	12:150442-30580981	0-	CNV	DGVa:nstd11	Database of Genomic Variants Archive: Walter 2009 "Acquired copy number alterations in adult acute myeloid leukemia genomes." PMID:19651600
nsv984792	12:163819-133778796	133614978133,614,978	CNV	DGVa:nstd92	Database of Genomic Variants Archive: Forsberg 2014 "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer." PMID:24777449
nsv984743	12:163819-133778796	133614978133,614,978	CNV	DGVa:nstd92	Database of Genomic Variants Archive: Forsberg 2014 "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer." PMID:24777449
nsv2769822	12:173786-11677456	1150367111,503,671	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv3892478	12:173786-11677456	1150367111,503,671	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv2771391	12:173786-20026080	1985229519,852,295	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv2771897	12:173786-25286865	2511308025,113,080	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv3905613	12:173786-25286865	2511308025,113,080	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv3904488	12:173786-28219229	2804544428,045,444	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv4455458	12:173786-34496628	3432284334,322,843	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv995956	12:173786-34835837	3466205234,662,052	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv3901714	12:173786-34835837	3466205234,662,052	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv3924262	12:173786-34835837	3466205234,662,052	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv3897151	12:173786-37869107	3769532237,695,322	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv2771336	12:173786-37869301	3769551637,695,516	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv3905633	12:173786-37869301	3769551637,695,516	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv2770609	12:173787-133777902	133604116133,604,116	CNV	DGVa:nstd37	Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv3905447	12:173787-133777902	133604116133,604,116	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv7098813	12:176047-34179852	3400380634,003,806	CNV	dbVar:nstd102	NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.

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Name	Chr:bp	Genomic size (bp)	Class	Source Study	Study description
CN_566961	12:10314693-10314717	0-	CNV_PROBE	Affy GenomeWideSNP_6 CNV	Copy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_566978	12:10320506-10320530	0-	CNV_PROBE	Affy GenomeWideSNP_6 CNV	Copy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_566982	12:10321825-10321849	0-	CNV_PROBE	Affy GenomeWideSNP_6 CNV	Copy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0

Gene: OLR1 ENSG00000173391

Structural variants

Structural variants

Copy number variant probes

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Gene: OLR1 ENSG00000173391

Structural variants

Structural variants

Copy number variant probes