Human (GRCh37.p13)
Description

C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]

Gene Synonyms

CLL-1, CLL1, DCAL-2, DCAL2, MICL

Location

Chromosome 12: 10,103,915-10,148,293 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 7 transcripts (splice variants) and 6 paralogues.

Show/hide columns (1 hidden)
  • Transcript ID
  • Name
  • bp
  • Protein
  • Translation ID
  • Biotype
  • CCDS
  • UniProt Match
  • RefSeq
  • Flags
Transcript IDNamebpProteinBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000355690.4CLEC12A-0071428275aa
 
Protein coding
CCDS55803A8MVL9 Q5QGZ9 NM_001207010.1Ensembl CanonicalGENCODE Basic
ENST00000304361.4CLEC12A-0011549265aa
 
Protein coding
CCDS8608A8MVL9 Q5QGZ9 NM_201623.3GENCODE Basic
ENST00000434319.2CLEC12A-0021515213aa
 
Protein coding
A8MVL9 Q5QGZ9 -GENCODE Basic
ENST00000350667.4CLEC12A-003699232aa
 
Protein coding
CCDS8609Q5QGZ9 -GENCODE Basic
ENST00000396507.3CLEC12A-006570165aa
 
Protein coding
A8MVL9 -CDS 3' incomplete
ENST00000449959.2CLEC12A-0041681No protein
 
Retained intron
---
ENST00000543839.1CLEC12A-0051069No protein
 
Retained intron
---

Structural variants

Show/hide columns
  • Name
  • Chr:bp
  • Genomic size (bp)
  • Class
  • Source Study
  • Study description
NameChr:bpGenomic size (bp)ClassSource StudyStudy description
nsv390424212:1-133851895133,851,895CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv390648412:89061-3417879934,089,739CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv390672312:148034-3417879934,030,766CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277172212:148375-3786447737,716,103CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv391442712:148375-3786447737,716,103CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv42957812:150442-11474657-CNVDGVa:nstd11Database of Genomic Variants Archive: Walter 2009 "Acquired copy number alterations in adult acute myeloid leukemia genomes." PMID:19651600
nsv42963012:150442-30580981-CNVDGVa:nstd11Database of Genomic Variants Archive: Walter 2009 "Acquired copy number alterations in adult acute myeloid leukemia genomes." PMID:19651600
nsv98479212:163819-133778796133,614,978CNVDGVa:nstd92Database of Genomic Variants Archive: Forsberg 2014 "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer." PMID:24777449
nsv98474312:163819-133778796133,614,978CNVDGVa:nstd92Database of Genomic Variants Archive: Forsberg 2014 "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer." PMID:24777449
nsv276982212:173786-1167745611,503,671CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv389247812:173786-1167745611,503,671CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277139112:173786-2002608019,852,295CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv277189712:173786-2528686525,113,080CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390561312:173786-2528686525,113,080CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv390448812:173786-2821922928,045,444CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv445545812:173786-3449662834,322,843CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv99595612:173786-3483583734,662,052CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390171412:173786-3483583734,662,052CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv392426212:173786-3483583734,662,052CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv389715112:173786-3786910737,695,322CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277133612:173786-3786930137,695,516CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390563312:173786-3786930137,695,516CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv277060912:173787-133777902133,604,116CNVDGVa:nstd37Database of Genomic Variants Archive: International Standards for Cytogenetic Array Consortium
nsv390544712:173787-133777902133,604,116CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
nsv709881312:176047-3417985234,003,806CNVdbVar:nstd102NCBI database of human genomic structural variation: Structural Variants with clinical assertions, submitted to ClinVar by external labs.
Showing 1 to 25 of 266 entries
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Copy number variant probes

Show/hide columns
  • Name
  • Chr:bp
  • Genomic size (bp)
  • Class
  • Source Study
  • Study description
NameChr:bpGenomic size (bp)ClassSource StudyStudy description
CN_64036712:10104158-10104182-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59065712:10116354-10116378-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59065912:10117397-10117421-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59067612:10121432-10121456-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59067812:10121840-10121864-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59068212:10122942-10122966-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59069012:10126761-10126785-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59069212:10127274-10127298-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59070512:10130066-10130090-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59071012:10131620-10131644-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59272412:10133211-10133235-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59273012:10135307-10135331-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59273712:10137579-10137603-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59274012:10138089-10138113-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59275312:10142319-10142343-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59275412:10142556-10142580-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59275912:10143591-10143615-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
CN_59276712:10147592-10147616-CNV_PROBEAffy GenomeWideSNP_6 CNVCopy Number Variation (CNV) probes from the Affymetrix Genome-Wide Human SNP Array 6.0
Showing 1 to 18 of 18 entries
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