Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: UCKL1 ENSG00000198276

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Description

uridine-cytidine kinase 1-like 1 [Source:HGNC Symbol;Acc:15938]

Gene Synonyms

FLJ20517, UCK1-LIKE, UCK1L, URKL1

Location

Chromosome 20: 62,571,186-62,587,769 reverse strand.

GRCh37:CM000682.1

About this gene

This gene has 7 transcripts (splice variants) and 2 paralogues.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354216.6	UCKL1-001	1833	548aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13547	Q5JWV1 Q9NWZ5	NM_017859.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000369908.5	UCKL1-006	1954	533aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54479	Q5JWV1 Q9H3Z3 Q9NWZ5	NM_001193379.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000358711.3	UCKL1-201	1876	419aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NWZ5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000369892.3	UCKL1-202	1827	548aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WAC3 Q5JWV1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000430743.1	UCKL1-005	888	135aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JWV1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492660.1	UCKL1-004	545	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483710.1	UCKL1-003	524	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Regulation

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Accession
Location
Source

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Feature type	Accession	Location	Source
TarBase	MIMAT0000068	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572358	Tarbase hsa-miR-15a-5p target
TarBase	MIMAT0000069	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572360	Tarbase hsa-miR-16-5p target
TarBase	MIMAT0000089	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572778-62572805	Tarbase hsa-miR-31-5p target
TarBase	MIMAT0000101	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572358	Tarbase hsa-miR-103a-3p target
TarBase	MIMAT0000104	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572358	Tarbase hsa-miR-107 target
TarBase	MIMAT0000417	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572356	Tarbase hsa-miR-15b-5p target
TarBase	MIMAT0000440	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572772-62572799	Tarbase hsa-miR-191-5p target
TarBase	MIMAT0000461	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572360	Tarbase hsa-miR-195-5p target
TarBase	MIMAT0001341	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572356	Tarbase hsa-miR-424-5p target
TarBase	MIMAT0002820	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572337-62572358	Tarbase hsa-miR-497-5p target
TarBase	MIMAT0003220	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572333-62572361	Tarbase hsa-miR-556-5p target
TarBase	MIMAT0004780	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572827-62572854	Tarbase hsa-miR-532-3p target
TarBase	MIMAT0007884	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62571271-62571281	Tarbase hsa-miR-1910-5p target
TarBase	MIMAT0019779	/Homo_sapiens/Location/View?db=core;g=ENSG00000198276;r=20:62572336-62572360	Tarbase hsa-miR-4690-5p target

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