Gene: RPS11 ENSG00000142534

Description

ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Gene Synonyms

RNU35B, S11, U35B

Location

Chromosome 19: 49,999,622-50,002,946 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000270625.2	RPS11-001	614	158aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12769	M0QZC5 M0R1H5 P62280	NM_001015.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000596873.1	RPS11-006	583	118aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZC5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594493.1	RPS11-003	575	79aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1H5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000599561.1	RPS11-008	430	88aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1H6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000601306.1	RPS11-009	547	82aa	Nonsense mediated decay		M0QZ90	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599167.1	RPS11-004	1133	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600027.1	RPS11-005	944	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602252.1	RPS11-002	751	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601216.1	RPS11-007	602	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

External references

This gene corresponds to the following database identifiers:

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External database	Database identifier
Expression Atlas	ENSG00000142534 [view all locations]
HGNC Symbol	RPS11 ribosomal protein S11 [view all locations]
MIM gene	RIBOSOMAL PROTEIN S11 [*180471] RIBOSOMAL PROTEIN S11; RPS11 [view all locations]
NCBI gene (formerly Entrezgene)	RPS11 ribosomal protein S11 [view all locations] SNORD35B small nucleolar RNA, C/D box 35B [view all locations]
UniGene	Hs.731623 [Target %id: 99; Query %id: 56] Transcribed locus, strongly similar to NP_001026004.1 RPS11 gene product [Gallus gallus] [view all locations]
WikiGene	RPS11 ribosomal protein S11 [view all locations] SNORD35B small nucleolar RNA, C/D box 35B [view all locations]

The following database identifiers correspond to the transcripts of this gene:

Transcript ID	Transcript name	CCDS	UniProtKB/ Swiss-Prot	RefSeq mRNA	Human Protein Atlas	PDB
ENST00000270625.2	RPS11-001	CCDS12769.1	RS11_HUMAN	NM_001015.4	HPA049719 HPA049719	3J3A
ENST00000596873.1	RPS11-006				HPA049719
ENST00000594493.1	RPS11-003
ENST00000599561.1	RPS11-008
ENST00000601306.1	RPS11-009
ENST00000600027.1	RPS11-005
ENST00000599167.1	RPS11-004
ENST00000602252.1	RPS11-002
ENST00000601216.1	RPS11-007

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Gene: RPS11 ENSG00000142534

External references