Gene: DDX58 ENSG00000107201

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Source:HGNC Symbol;Acc:19102]

Gene Synonyms

DKFZp434J1111, FLJ13599, RIG-I, RIGI, RLR-1

Location

Chromosome 9: 32,455,300-32,526,322 reverse strand.

GRCh37:CM000671.1

About this gene

This gene has 5 transcripts (splice variants), 3 paralogues and is associated with 2 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379883.2	DDX58-001	4353	925aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6526	A2A376 O95786	NM_014314.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000379882.1	DDX58-201	4621	880aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A376 O95786	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000379868.1	DDX58-002	4089	722aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A376	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542096.1	DDX58-202	3253	854aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A376 B3KWW1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545044.1	DDX58-203	2122	536aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5W6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

External references

This gene corresponds to the following database identifiers:

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External database	Database identifier
Expression Atlas	ENSG00000107201 [view all locations]
HGNC Symbol	DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [view all locations]
MIM gene	DEAD BOX POLYPEPTIDE 58 [*609631] DEAD BOX POLYPEPTIDE 58; DDX58 [view all locations]
NCBI gene (formerly Entrezgene)	DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [view all locations]
UniGene	Hs.190622 [Target %id: 94; Query %id: 91] DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [view all locations] Hs.609798 [Target %id: 10; Query %id: 97] Transcribed locus [view all locations]
WikiGene	DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [view all locations]

The following database identifiers correspond to the transcripts of this gene:

Transcript ID	Transcript name	CCDS	UniProtKB/ Swiss-Prot	RefSeq mRNA	Human Protein Atlas	PDB
ENST00000379883.2	DDX58-001	CCDS6526.1	DDX58_HUMAN	NM_014314.3	CAB012643 CAB012643 HPA047193	2LWD 2LWE 2QFB 2QFD 2RMJ 2YKG 3LRN 3LRR 3NCU 3OG8 3TMI 3ZD6 3ZD7 4AY2 4BPB
ENST00000379868.1	DDX58-002				CAB012643 HPA047193
ENST00000379882.1	DDX58-201		DDX58_HUMAN		CAB012643 CAB012643 HPA047193	2LWD 2LWE 2QFB 2QFD 2RMJ 2YKG 3LRN 3LRR 3NCU 3OG8 3TMI 3ZD6 3ZD7 4AY2 4BPB
ENST00000542096.1	DDX58-202				CAB012643 HPA047193
ENST00000545044.1	DDX58-203				CAB012643 HPA047193

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Recent locations

Gene: DDX58 ENSG00000107201

External references